My paint and Krita are great, I use them daily
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Sorry, Joplin is a nightmare. I want something that stores Markdown in flat files, not a database with changing versions where one version of the db doesn't work in another version.
I tried to port the database over from another system, but the new version of Joplin wouldn't read from the old version's database, and it would corrupt the database when I tried to open it. What a crock of shit. I had to figure out how to dump the data from the tables using sqlite.
I use nb now instead. It is a bit wonky because it uses NodeJS, but you can view and edit files in a web browser, and it saves each entry as a .md file, which is the sane and rational way to do it. So, if nb ever fucks off, I have all my work in a directory of Markdown files, not some broken-ass sqlite database.
Markor: one of the few Android text editors/notepads that saves text to text files (crazy idea, right?) and works rally well with Syncthing.
Conversations.im for Android is an incredibly well made XMPP/Jabber messenger, and their message polling and real-time message delivery is unmatched AFAIK.
ratbag (and the frontend, piper) is a tool for remapping buttons on mice with a sensible interface. Beats installing proprietary Logitech software.
OpenDroneMap. It's a suite that provides photogrammetry, stitching, volumetric analysis, geographic correlation, and 3D model conversion from aerial and non-aerial photos. And that's only the features that I use myself. It defaults to CPU-only rendering, so you don't need a big bad GPU to GSD.
Even ignoring the lack of subscription cost, ODM performs at least as well as other applications I tried such as Pix4D. Professionally, I use it for year-over-year kelp bed monitoring, photosynthetic mass analysis, and home construction analysis, specifically volumetric infill needs. Personally, I use it to generate 3D models of my boat interior, which I convert to STL files for arranging infrastructure in limited spaces.
OBS, Portmaster, Trilium, FlightGear
+all the minimalist Adwaita apps on the Flathub. Love 'em.
AntennaPod is a pretty great podcast player, far better than the one Google did (and abandonned)
Newsblur is the only RSS reader that I've found that can apply filters to feeds
I've switched from Discord to Element with some friends for daily text chat and vocal chat (video games) and it's less cluttered than Discord, and the voice even sounds better
SpamBlocker is a better phone/SMS spam filter than the proprietary ones I've tried
Firefox (and forks) has been my browser for more than 20 years, I can't go back to proprietary ones
Honestly, almost all Microsoft products are objectively worse than FOSS alternatives, they are just so big that people are unwilling to escape the Microsoft ecosystem.
Way, way better than excel for working with tabular data. Excel is child's play in comparison.
Dnscrypt-proxy has no comparison, IMO. DNS encryption, caching, IP & domain blocking, local DoH. It's so useful.
pdfSAM. OBS. Veracrypt. A bunch of macOS usability tools that I am definitely taking for granted at this point.
I agree with most of the programs that others have posted. I'll just mention two that I absolutely love but no one has mentioned yet, rsync
and mpv
.